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Typedefs
Macros
- a -
alignBest() :
align.h
alignDatabase() :
database.h
alignmentCopyPath() :
alignment.h
alignmentCreate() :
alignment.h
alignmentDelete() :
alignment.h
alignmentDeserialize() :
alignment.h
alignmentGetMove() :
alignment.h
alignmentGetPathLen() :
alignment.h
alignmentGetQuery() :
alignment.h
alignmentGetQueryEnd() :
alignment.h
alignmentGetQueryStart() :
alignment.h
alignmentGetScore() :
alignment.h
alignmentGetScorer() :
alignment.h
alignmentGetTarget() :
alignment.h
alignmentGetTargetEnd() :
alignment.h
alignmentGetTargetStart() :
alignment.h
alignmentSerialize() :
alignment.h
alignPair() :
align.h
alignPairCpu() :
cpu_module.h
alignScoredPair() :
align.h
alignScoredPairCpu() :
cpu_module.h
- c -
chainCopyCodes() :
chain.h
chainCreate() :
chain.h
chainCreateView() :
chain.h
chainDatabaseCreate() :
database.h
chainDatabaseDelete() :
database.h
chainDatabaseGpuCreate() :
gpu_module.h
chainDatabaseGpuDelete() :
gpu_module.h
chainDelete() :
chain.h
chainDeserialize() :
chain.h
chainGetChar() :
chain.h
chainGetCode() :
chain.h
chainGetLength() :
chain.h
chainGetName() :
chain.h
chainSerialize() :
chain.h
checkAlignment() :
post_proc.h
createChainComplement() :
pre_proc.h
cudaCheckCards() :
cuda_utils.h
cudaGetCards() :
cuda_utils.h
- d -
dbAlignmentCopyPath() :
db_alignment.h
dbAlignmentCreate() :
db_alignment.h
dbAlignmentDelete() :
db_alignment.h
dbAlignmentGetMove() :
db_alignment.h
dbAlignmentGetPathLen() :
db_alignment.h
dbAlignmentGetQuery() :
db_alignment.h
dbAlignmentGetQueryEnd() :
db_alignment.h
dbAlignmentGetQueryIdx() :
db_alignment.h
dbAlignmentGetQueryStart() :
db_alignment.h
dbAlignmentGetScore() :
db_alignment.h
dbAlignmentGetScorer() :
db_alignment.h
dbAlignmentGetTarget() :
db_alignment.h
dbAlignmentGetTargetEnd() :
db_alignment.h
dbAlignmentGetTargetIdx() :
db_alignment.h
dbAlignmentGetTargetStart() :
db_alignment.h
dbAlignmentGetValue() :
db_alignment.h
dbAlignmentToAlignment() :
db_alignment.h
deleteDatabase() :
post_proc.h
deleteFastaChains() :
post_proc.h
deleteShotgunDatabase() :
post_proc.h
dumpFastaChains() :
post_proc.h
- h -
hwEndDataGpu() :
gpu_module.h
- m -
mutexCreate() :
thread.h
mutexDelete() :
thread.h
mutexLock() :
thread.h
mutexUnlock() :
thread.h
- n -
nwFindScoreCpu() :
cpu_module.h
nwFindScoreGpu() :
gpu_module.h
nwLinearDataGpu() :
gpu_module.h
nwReconstruct() :
reconstruct.h
nwReconstructCpu() :
cpu_module.h
- o -
outputAlignment() :
post_proc.h
outputDatabase() :
post_proc.h
outputScore() :
post_proc.h
outputShotgunDatabase() :
post_proc.h
ovEndDataGpu() :
gpu_module.h
ovFindScoreCpu() :
cpu_module.h
ovFindScoreGpu() :
gpu_module.h
- r -
readAlignment() :
post_proc.h
readFastaChain() :
pre_proc.h
readFastaChains() :
pre_proc.h
- s -
scoreDatabaseGpu() :
gpu_module.h
scoreDatabasesGpu() :
gpu_module.h
scorePair() :
align.h
scorePairCpu() :
cpu_module.h
scorerCreate() :
scorer.h
scorerCreateMatrix() :
pre_proc.h
scorerCreateScalar() :
pre_proc.h
scorerDecode() :
scorer.h
scorerDelete() :
scorer.h
scorerDeserialize() :
scorer.h
scorerEncode() :
scorer.h
scorerGetGapExtend() :
scorer.h
scorerGetGapOpen() :
scorer.h
scorerGetMaxCode() :
scorer.h
scorerGetMaxScore() :
scorer.h
scorerGetName() :
scorer.h
scorerIsScalar() :
scorer.h
scorerScore() :
scorer.h
scorerSerialize() :
scorer.h
semaphoreCreate() :
thread.h
semaphoreDelete() :
thread.h
semaphorePost() :
thread.h
semaphoreValue() :
thread.h
semaphoreWait() :
thread.h
shotgunDatabase() :
database.h
swEndDataGpu() :
gpu_module.h
- t -
threadCancel() :
thread.h
threadCreate() :
thread.h
threadCurrent() :
thread.h
threadJoin() :
thread.h
threadSleep() :
thread.h
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