constants.h File Reference

Project constants definitions header. More...

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Macros
#define	HW_ALIGN   0
	Constant used for defining the semiglobal alignment.
#define	NW_ALIGN   1
	Constant used for defining the global alignment.
#define	SW_ALIGN   2
	Constant used for defining the local alignment.
#define	OV_ALIGN   3
	Constant used for defining the overlap alignment.
#define	NO_SCORE   -1000000001
	Constant used for defining an unknown score.
#define	SCORE_MIN   -1000000000
	Constant used for defining score minimum, in other words -infinity.

Variables
int	BLOSUM_45_TABLE [26 *26]
	Similarity matrix table scores.
int	BLOSUM_50_TABLE [26 *26]
	Similarity matrix table scores.
int	BLOSUM_62_TABLE [26 *26]
	Similarity matrix table scores.
int	BLOSUM_80_TABLE [26 *26]
	Similarity matrix table scores.
int	BLOSUM_90_TABLE [26 *26]
	Similarity matrix table scores.
int	PAM_30_TABLE [26 *26]
	Similarity matrix table scores.
int	PAM_70_TABLE [26 *26]
	Similarity matrix table scores.
int	PAM_250_TABLE [26 *26]
	Similarity matrix table scores.
int	EDNA_FULL_TABLE [26 *26]
	Similarity matrix table scores.

Detailed Description

Project constants definitions header.